GgaEX1052284 @ galGal3
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
NA
Coordinates
chr17:5533351-5545587:+
Coord C1 exon
chr17:5533351-5533496
Coord A exon
chr17:5537099-5537138
Coord C2 exon
chr17:5545459-5545587
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTCCCCCTTCTAGCCA
3' ss Score
9.93
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATCCCAGGGAACAGCCCCAGCCCTGGGATGGAGGCACCGAGCCCCAGCCTGGCCCCCAGCCCCAGTGCAGCATCAGGAGCAGAGACCACGGATGGGGATTTCCAGGAAAAGGGGCAAGAACGTCCCAGCGAGAGCTCCCCAGACAG
Seq A exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAATACATCCTGGACTCGTCACCGGAGAAGCTTCACAAGGAGCTGGAAGAGGAGCTGAAGCTGAGCAGCACCGACCTGCGCAGCCACGCGTGGTACCACGGCCGCATCCCGCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036-'1-4,'1-2,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCAGGAGCAGAGACCA
R:
GCTCCTTGTGAAGCTTCTCCG
Band lengths:
134-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]