BtaEX6046634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019453 | PTGES
Description
Bos taurus prostaglandin E synthase (PTGES), mRNA. [Source:RefSeq mRNA;Acc:NM_174443]
Coordinates
chr11:100143653-100155090:-
Coord C1 exon
chr11:100154954-100155090
Coord A exon
chr11:100151306-100151388
Coord C2 exon
chr11:100143653-100144287
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTCAGCTGATGTATTCCAGGCT
3' ss Score
4.66
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CCACCGAGATGCCGCCCTCCGGCCTGGAGCTGATGAACGGCCAGGTGCTCCCCGCCTTCCTGCTCTGCAGCGCGCTGCTGGTCATCAAAATGTACGTGGTGGCCGTCATCACCGGCCAAGTGAGGCTGCGGAAGAAG
Seq A exon
GCTTTTGCCAACCCCGAGGACGCTCAGAGACATGGAGGCCTCCAGTATTGCCGGAACGACCCAGATGTGGAACGCTGCCTCAG
Seq C2 exon
AGCCCACCGGAATGACATGGAGACCATCTACCCCTTCCTGTTCCTGGGCTTTGTCTACTCTTTCCTCGGACCGAACCCCTTCGTCGCCCGGATGCACTTCCTGGTCTTCTTCCTGGGCCGTATGGTACACACCGTGGCATACCTGGGGAAACTGCGGGCGCCCACCCGCTCCCTGGCCTACACCCTGGCCCAGCTCCCCTGCGCCTCCATGGCCCTGCAGATTGTCTGGGAGGCAGCCCGCCACCTGTGACCAGCCGTGGACGCCACCTCGGCCGCCAGACCGCTGGCCACGAGCCAGCGGGGCTGAACCTGGGGGACCGATGGCCCTTTGAGATTGTGACAGGCCCTGGGGCTGGGTTCCTGGCAACTGGCTGAGCACGTGATCTTGGGCCCAGGGGGCCTGTGTGTGTTTCCCCGTGTGTCCCTTGGATTCCTGGGTGAAGCGGCTGATTTGGAACTGTTTAGAGACGGACCGTCACGATTGATAGAAAATTCTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019453-'0-2,'0-0,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=60.5)
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGCTGGTCATCAAAATG
R:
GAAGACCAGGAAGTGCATCCG
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]