MmuEX0037687 @ mm10
Exon Skipping
Gene
ENSMUSG00000050737 | Ptges
Description
prostaglandin E synthase [Source:MGI Symbol;Acc:MGI:1927593]
Coordinates
chr2:30889471-30929863:-
Coord C1 exon
chr2:30929762-30929863
Coord A exon
chr2:30900867-30900949
Coord C2 exon
chr2:30889471-30892826
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTCACCTGCTGTGTTTCAGGCT
3' ss Score
8.78
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCGAAAAGCCCGAAGCCCCCTTGGATATCACGCCGCCAAGGCCTCCAGTGTGACGTGGTGACGTCATCACGGATGAGCTCAGCAGAGACACCTGAGGACAAG
Seq A exon
GCTTTTGCCAACCCCGAGGATGCGCTGAAACGTGGAGGCCTCCAGTATTACAGGAGTGACCCAGATGTGGAGCGCTGCCTCAG
Seq C2 exon
AGCCCACCGCAACGACATGGAGACAATCTATCCTTTCCTCTTCCTCGGCTTCGTGTACTCATTCCTGGGACCCAACCCTCTGATCGCCTGGATACATTTCCTCGTTGTCCTCACAGGCCGTGTGGTACACACCGTGGCCTACCTGGGCAAGCTGAACCCACGCCTTCGCTCCGGGGCCTATGTCCTGGCCCAGTTCTCCTGTTTCTCCATGGCCCTGCAGATCCTCTGGGAGGTGGCCCACCATCTGTGACCAGCAGCTGAAGCCTCCTCAGCTACCACAGTGGGGACAGAGCCATGAAGGCTGAACTTGCGGACTTGGTGTCTCTTCTAGAATAGGGACGGGGTCTGGTCCTGGGGTCCTGGGTAACCTGGGCGAGTGGATCTCAGGGCCCAATGTGCACATGTGTGTTTCTTAGCCTTTTGGGATGCTAGATGAAGTCCCATTTGGAGCCACTTACAGATGAGCTGTCAAGATTTGAGAGGACATCCTTCACCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050737_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGATATCACGCCGCCAAG
R:
TGTATCCAGGCGATCAGAGGG
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types