DmeEX0001888 @ dm6
Exon Skipping
Gene
FBgn0053178 | CG33178
Description
This gene is referred to in FlyBase by the symbol DmelCG33178 (FBgn0053178). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is X:15082827..15084017. Its molecular function is described by: glutathione peroxidase activity; glutathione transferase activity. It is involved in the biological process described with: glutathione metabolic process. 7 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period.
Coordinates
chrX:15082827-15083777:+
Coord C1 exon
chrX:15082827-15083041
Coord A exon
chrX:15083257-15083336
Coord C2 exon
chrX:15083488-15083777
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTATTTTCCGCTCTTATAGATC
3' ss Score
8.99
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CATTTGTCGAAGTCGGCTCAAAGCGAACGCACACACATTCCGCATCCGCCATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGATGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGCTATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCTGCTAACGGCCGTTCAGCGTTTCCGGTATAAG
Seq A exon
ATCTTTCCCAACCAGGAGGATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAGCGGGTCAGAAG
Seq C2 exon
GGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTTTATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCTGCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTTTACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCACCATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCCTAAGCTTTATATGAATAAATTCAAGTCCCTTTCGGCTTAACCCTCAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0053178-'0-3,'0-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=47.3)
A:
PF0112413=MAPEG=FE(19.8=100)
C2:
PF0112413=MAPEG=PD(58.8=90.6)
Main Inclusion Isoform:
FBpp0073780
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0309372, FBpp0311919
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGTGGTGAAGATGCTG
R:
CCACTCGGAACAGTATGCAGG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)