HsaEX0039142 @ hg38
Exon Skipping
Gene
ENSG00000008394 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:HGNC:7061]
Coordinates
chr12:16354231-16364409:+
Coord C1 exon
chr12:16354231-16354378
Coord A exon
chr12:16357605-16357699
Coord C2 exon
chr12:16363795-16364409
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGGTATTTGGATAGGTT
3' ss Score
6.54
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATTCCAGACCAAAATTGAAAAAATGGTTGACCTCACCCAGGTAATGGATGATGAAGTATTCATGGCTTTTGCATCCTATGCAACAATTATTCTTTCAAAAATGATGCTTATGAGTACTGCAACTGCATTCTATAGATTGACAAGAAAG
Seq A exon
GTTTTTGCCAATCCAGAAGACTGTGTAGCATTTGGCAAAGGAGAAAATGCCAAGAAGTATCTTCGAACAGATGACAGAGTAGAACGTGTACGCAG
Seq C2 exon
AGCCCACCTGAATGACCTTGAAAATATTATTCCATTTCTTGGAATTGGCCTCCTGTATTCCTTGAGTGGTCCCGACCCCTCTACAGCCATCCTGCACTTCAGACTATTTGTCGGAGCACGGATCTACCACACCATTGCATATTTGACACCCCTTCCCCAGCCAAATAGAGCTTTGAGTTTTTTTGTTGGATATGGAGTTACTCTTTCCATGGCTTACAGGTTGCTGAAAAGTAAATTGTACCTGTAAAGAAAATCATACAACTCAGCATCCAGTTGGCTTTTTAAGAATTCTGTACTTCCAATTTATAATGAATACTTTCTTAGATTTTAGGTAGGAGGGGAGCAGAGGAATTATGAACTGGGGTAAACCCATTTTGAATATTAGCATTGCCAATATCCTGTATTCTTGTTTTACATTTGGATTAGAAATTTAACATAGTAATTCTTAAGTCTTTTGTCTGATTTTTAAAGTACTTTCTTATAAATTTGGATCATGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000008394-'11-24,'11-17,14-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.010
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=61.9)
A:
PF0112413=MAPEG=PU(30.3=93.8)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTATGAGTACTGCAACTGC
R:
ATGGTGTGGTAGATCCGTGCT
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development