DreEX6001579 @ danRer10
Exon Skipping
Gene
ENSDARG00000032618 | mgst1.1
Description
microsomal glutathione S-transferase 1.1 [Source:ZFIN;Acc:ZDB-GENE-041010-30]
Coordinates
chr4:12716846-12718735:-
Coord C1 exon
chr4:12718599-12718735
Coord A exon
chr4:12717564-12717655
Coord C2 exon
chr4:12716846-12717491
Length
92 bp
Sequences
Splice sites
3' ss Seq
TAATGATGCCATTTGTTCAGGTC
3' ss Score
4.83
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
TTTAAACTAAGATGGCAGAAGTTGTGCACATGATCGACAGTGAGGTCTTTCTGGCCTTCTCCACATACGCAACCATAGTCATCCTCAAAATGATGCTCATGAGCCTCATGACCTCTTACCTGCGATTGACAAAACAG
Seq A exon
GTCTTCTCCAACTTGGAGGACACCGCCATGGCAATAGCAGAAGACAAGAAAAAACTGGTTAGGACTGATCCAGATGTGGAAAGAGTGCGACG
Seq C2 exon
ATGCCATCTGAATGACCTGGAAAGCATCGTTCCTTTTGTGGTGATCGGTCTTCTGTATGCACTGACGGGGCCGGTTCTCTCCACTGCTCTTTTGCACTTCCGGGTGTTTGTAGTGTCCCGATTCATCCATACAGTCGCGTACATAATGGCTCTTCCGCAACCTACCAGAGGTGTAGCCTTTGGCGTAGGGCTGCTTACAACTTTATCTATGGCCTACAGGGTGCTCACTACTGCTCTTTTTCTTTAATGAATAACACTCGTTCATATACAGCTCAAGTCAGAATTATTCCCCCCCCCCCTGTTTATTTTTCCCCCCAATTTCTGTTTAACAGAGAGAAGACTTTTTTTCAGCACATTTCTAAACATAATAGTTTTAATAACTCATCTCTAATAACTGATTTATTTTATATTTGCCATGATGACAGTAAATAATATTTTACTAGATAAAGACTCTTCCATACAGCTTAAAGTGACGTTTAAAGGTTTAACCAGGTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032618-'4-4,'4-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.4=61.9)
A:
PF0112413=MAPEG=FE(22.4=100)
C2:
PF0112413=MAPEG=PD(56.7=91.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGTGAGGTCTTTCTGGC
R:
CCCCGTCAGTGCATACAGAAG
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]