MmuEX0028932 @ mm9
Exon Skipping
Gene
ENSMUSG00000008540 | Mgst1
Description
microsomal glutathione S-transferase 1 [Source:MGI Symbol;Acc:MGI:1913850]
Coordinates
chr6:138096180-138105276:+
Coord C1 exon
chr6:138096180-138096336
Coord A exon
chr6:138099289-138099383
Coord C2 exon
chr6:138104653-138105276
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCGTATTTGGAATAGGTT
3' ss Score
6.99
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TCATTTGAAGACTGAGACCAAGATTGGAAGCATGGCCGACCTCAGGCAGCTCATGGACAATGAGGTGTTGATGGCCTTTACCTCCTATGCAACGATCATTCTTACCAAGATGATGTTCATGAGCTCTGCGACCGCATTCCAGAGGATAACCAACAAG
Seq A exon
GTTTTTGCCAACCCAGAAGACTGCGCTGGCTTTGGCAAGGGAGAGAATGCCAAGAAGTTTGTTCGCACTGACGAGAAGGTGGAACGCGTGCGCAG
Seq C2 exon
AGCCCACCTGAATGATCTTGAAAACATCGTTCCCTTTCTCGGCATCGGCCTCCTGTACTCCCTGAGTGGACCAGATCTCTCTACAGCCCTCATGCACTTCAGAATCTTTGTAGGTGCTCGGATCTACCACACCATTGCTTACTTGACTCCCCTTCCTCAGCCAAACAGGGGCTTGGCATTTTTTGTTGGCTATGGAGTTACTTTGTCAATGGCTTACAGGCTGCTAAGGAGCAGACTGTACTTGTAAAGAGAATTGTGATCTTCACCTTCTAATTGATTCTTTTTAAAAAAAGAATTCCTATATTTTCAGTGGATTCAAACTCTTTCTGAGGTTTTAATGCGTGAAAGGAGCAGAGAAATTAGGAATCAGGGAAAATTCAGTTAAAAGACTAGCATCAGTAGGCTCTATTCTTTTGTATTTGGGTTAGAAATTTAATATAATCAGCCTTAACTATGTTGTCTAACTCCTAAAGTACTTTGTTATAAAGTCTTGATTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008540-'6-7,'6-5,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=61.9)
A:
PF0112413=MAPEG=FE(23.0=100)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCATGAGCTCTGCGACC
R:
ATGGTGTGGTAGATCCGAGCA
Band lengths:
180-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: