BtaEX6023782 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008541 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:HGNC:7061]
Coordinates
chr5:93926791-93942195:-
Coord C1 exon
chr5:93942055-93942195
Coord A exon
chr5:93939150-93939244
Coord C2 exon
chr5:93926791-93927397
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGGTATTTGGAATAGGTT
3' ss Score
6.23
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACCAAAATCAAAAAAATGGCCAACCTTTCACAGCTAATGGAGAATGAAGTATTCATGGCCTTTGCCTCCTACACGACGATTGTGCTTTCAAAAATGATGTTTATGAGCACTGCAACTGCATTCTATAGACTGACAAGAAAG
Seq A exon
GTTTTTGCCAACCCAGAAGACTGCGCGGGCTTCGGCAAAGGAGAAAATGCCAAGAAGTATCTTCGGACAGATGACAGGGTGGAACGTGTTCGAAG
Seq C2 exon
AGCCCACTTGAATGACCTTGAAAACATCGTGCCATTTCTTGGTATTGGCCTTCTGTATTCCTTGAGTGGTCCAGACCTCTCTACAGCCATCCTGCACTTCAGACTCTTTGTCGGAGCACGAATCTACCACACGATTGCGTATTTGACACCCCTTCCCCAGCCAAATCGCGCTTTGGCTTTTTTCATTGGCTATGGAGTTACACTTTCAATGGCTTACAGATTGCTGAAGAGTAAACTGTACCTGTAAAGAGAATCATACAACCCATCATCCAATGATTTTCTAAAAATTCTGTACTTCCAATTTATAATGAATCCTTTTATGATTTTAAGCGGGAGGGAAGCAGAGAAATTAAGATAGAGAAAACCCAATCTGCATATTAATGCCACCAATAGCCTTTATTCTTATTTTGTATTTACACAGGACATTTAACATAATTTTTAATTCCTTTGTCTTATTCATAAAGTACTTTGTCATAAATTTTGATTATAATTTGTAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008541-'7-8,'7-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=61.9)
A:
PF0112413=MAPEG=FE(23.0=100)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTACACGACGATTGTGC
R:
GAGTCTGAAGTGCAGGATGGC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]