GgaEX1036178 @ galGal3
Exon Skipping
Gene
ENSGALG00000013098 | MGST1
Description
NA
Coordinates
chr1:65430287-65434128:+
Coord C1 exon
chr1:65430287-65430448
Coord A exon
chr1:65431677-65431771
Coord C2 exon
chr1:65433523-65434128
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGATTTGAAACAGGCA
3' ss Score
8.08
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AGTAGTTTTCAAAGGTCATCAGTGAGAAGCGGAGAAATGGCTAAATCGACCCAGCTAATTGACAATGAAGTCTTCCGTGCTTATGCTACCTATGCAGCCATTGTTCTTCTAAAAATGATGCTTATGAGCCTTGTAACTGCATACTTCAGAATCACGAGAAAG
Seq A exon
GCATTTGCCAACCCAGAAGATACAGCATCATTTGGTAAAGGTGATAGTGCTAAAAAATTCCTGCGGATTGATGCAGATGTTGAACGTGTACGCAG
Seq C2 exon
AGGCCACCTGAATGACCTTGAAAACATTGTCCCATTTTTTGGCATTGGACTGCTGTATGCTCTCTGTGGCCCTGATCTGTCCACGGCCTTGCTGCATTTTAGGATCTTCGCAGGGGCAAGGATCCTTCACACTTTCGCATACTTGATCCCTCTTCCCCAGCCCAGTAGAGGTTTGTCTTGGGCAGTTGGTTATGCAGTTACCATCTCAATGGCATACAAAGTGCTGAGTAAAGCATTGTACCTGTAGCTGAATCATAGCTTCTATATATCATTCAACATTCCATGCAAAGTTTCCAGTGGTTAGTGTTTTGAATGAGCTGTCTAAGTTTTACAGAGTGACTGGAATTCATTTTTCAGCAGAGGCTTTTCATTCCTGTTTAGAAATATTTCCTTTTGGAGAAAAAAAAATATCCCTTTTCCTGTATTCCCTATTCATGGACTGTGCTGCCAAAATATTAGATTGAATGTTCTGTTTGCTATTTGTCAAGTGCTTATGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013098-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=56.5)
A:
PF0112413=MAPEG=FE(23.0=100)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCATCAGTGAGAAGCGGA
R:
TTCAAGGTCATTCAGGTGGCC
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]