HsaEX0039142 @ hg19
Exon Skipping
Gene
ENSG00000008394 | MGST1
Description
microsomal glutathione S-transferase 1 [Source:HGNC Symbol;Acc:7061]
Coordinates
chr12:16507165-16516740:+
Coord C1 exon
chr12:16507165-16507312
Coord A exon
chr12:16510539-16510633
Coord C2 exon
chr12:16516729-16516740
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGGTATTTGGATAGGTT
3' ss Score
6.54
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATTCCAGACCAAAATTGAAAAAATGGTTGACCTCACCCAGGTAATGGATGATGAAGTATTCATGGCTTTTGCATCCTATGCAACAATTATTCTTTCAAAAATGATGCTTATGAGTACTGCAACTGCATTCTATAGATTGACAAGAAAG
Seq A exon
GTTTTTGCCAATCCAGAAGACTGTGTAGCATTTGGCAAAGGAGAAAATGCCAAGAAGTATCTTCGAACAGATGACAGAGTAGAACGTGTACGCAG
Seq C2 exon
AGCCCACCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000008394-'7-11,'7-8,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=61.9)
A:
PF0112413=MAPEG=PU(30.3=93.8)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)