RnoEX0054324 @ rn6
Exon Skipping
Gene
ENSRNOG00000007743 | Mgst1
Description
microsomal glutathione S-transferase 1 [Source:RGD Symbol;Acc:70927]
Coordinates
chr4:172125611-172134607:+
Coord C1 exon
chr4:172125611-172125767
Coord A exon
chr4:172128410-172128504
Coord C2 exon
chr4:172134001-172134607
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGGTATTTGGAATAGGTT
3' ss Score
7.05
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TCATTTAAAGATTGAGACCAAGATTGAAAGCATGGCTGACCTCAAGCAGCTCATGGACAACGAGGTGTTGATGGCCTTTACCTCCTATGCAACGATCATTCTTGCCAAGATGATGTTCCTGAGCTCCGCGACTGCATTCCAGAGGCTAACCAACAAG
Seq A exon
GTTTTTGCCAACCCGGAAGACTGTGCTGGCTTCGGCAAGGGGGAGAATGCCAAGAAGTTCCTTCGGACTGACGAGAAGGTGGAACGCGTGCGAAG
Seq C2 exon
AGCCCACCTGAACGACCTTGAAAACATCGTTCCCTTTCTCGGTATCGGCCTCCTGTACTCCCTGAGCGGACCGGATCTCTCTACAGCCCTCATTCACTTCAGAATCTTTGTGGGCGCTCGGATCTACCACACCATTGCTTACTTGACTCCCCTTCCTCAGCCAAACAGGGGCTTGGCATTTTTTGTTGGCTACGGAGTTACTTTGTCAATGGCTTACAGGCTGCTCAGGAGCAGACTGTACTTGTAAAGAGATTTGTGACCGTCACCCTCTGATTGATTTAAAAAAATAAAGGATTCTATATTTCTAGTGTATTAAAAAACTTTCTAAGGTTTTATGTATGAAAGGAGCAGAGAAATCAGGAATCAGGGAAAATTCTGTTTGAAGACTACCATCCACAGGCTCTACCCTTTTGTACCTGGGTTAGACATTTAACATGACCGGCCTTAGCTATGCTGTCTAACTCCTAAAGTACTTTGTCCTAAGTCTTGAGTGCCTTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007743-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=61.9)
A:
PF0112413=MAPEG=FE(23.0=100)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGTTCCTGAGCTCCGC
R:
GAGCGCCCACAAAGATTCTGA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]