DreEX6001580 @ danRer10
Exon Skipping
Gene
ENSDARG00000022165 | mgst1.2
Description
microsomal glutathione S-transferase 1.2 [Source:ZFIN;Acc:ZDB-GENE-040704-59]
Coordinates
chr4:12720116-12724735:-
Coord C1 exon
chr4:12724606-12724735
Coord A exon
chr4:12721869-12721963
Coord C2 exon
chr4:12720116-12721790
Length
95 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTTCATAATTCAGGCC
3' ss Score
6.43
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAAATTTGTCAAAATGGCCGATCTGATGAACAGCGACGTGTTCCTGGCCTTCTGCACGTATGCCACTATCGTCATCCTCAAAATGATGTTCATGGCTCCTCTGACCGGATACTTCAGGTTTACTAGAAAG
Seq A exon
GCCTTTTCAAACTGGGAGGACACTGCAATGAGCAAAAATCCAGAGGCGCGAAAGAAGATGCTTCAGACCAATCCCGACGTAGAGCGTGTCCGAAG
Seq C2 exon
GTGCCATCTGAATGATCTGGAGAACATCATTCCCTTTGTGGTGATCGGTCTTCTGTATGCACTGACCGGTCCAGATCTCTCCACAGCTCTGCTGCACTTCCGGGTGTTTGTAGGCTCTCGTTTCATCCACACCGCGTCATACGTGCTGGCTCTTCCTCAGCCCAGCAGGGGTCTGTCCTGGGTGGTGGGAATGATCACAACCTTCTCCATGGCCTACAGAGTGCTCACCACAGCTCTCTATCTGTAAAGATGCCATTGCATTGCAGTATGCCGCAGAATGGTAGAGGCCAGTTTTGTATTTTTTGATTTTATTGGCTTTATACTTTCTTATTTCACTCTAGTGTATGCAATTGATAATAAAATCTGTGAACATTCAACTGCATTTTCAATTAATATACAGGTATTTGGAAAGAAGCCGCTGTTGTAATGTCAGTTTCTTCTATCAAATGTTTGTTATCAGTCAACAGGTCATTGTCACCATGACTCGGCGTTAAACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022165-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.3=66.7)
A:
PF0112413=MAPEG=FE(23.0=100)
C2:
PF0112413=MAPEG=PD(56.3=91.6)
Main Skipping Isoform:
ENSDART00000132286fB3851
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACAGCGACGTGTTCCT
R:
ATCTGGACCGGTCAGTGCATA
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]