GgaEX1046868 @ galGal3
Exon Skipping
Gene
ENSGALG00000004226 | E2IPN6_CHICK
Description
NA
Coordinates
chr17:6232902-6235425:-
Coord C1 exon
chr17:6235288-6235425
Coord A exon
chr17:6234039-6234121
Coord C2 exon
chr17:6232902-6233193
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATGGGGACACTCTCTTGCAGGCA
3' ss Score
6.32
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
Exon sequences
Seq C1 exon
GGCCAAGGCAGGAGCTCCGCATCCTCCACAATGATGGGGAACACCGTGTTCCTGTCATTCGCCTTCTACAGCACGATCCTGATCCTAAAGATGTATGTCGTTGCCATCATCACGGGACAAGTGAGGCTCAGGAAGAAG
Seq A exon
GCATTTGCTAACCCAGAGGATGCGCTGCGCAATGGAGGGCTGCAGTACTACCGTGAGGACCCCGATGTGGAGCGCTGCCGCAG
Seq C2 exon
GGCGCATCGCAATGACATGGAGAACATCTTCCCCTTCCTCTTCCTTGGAGCTGTGTACTCTCTGCTGGAGCCCAGTCCTGCAGTGGCCAGGGTCCACTTCTTCATCTTCTGCGTGGGACGCATCGTGCACACTGTGGCCTACCTGCTGAAGCTGAGGGCTCCCACGCGCTCTGTGGCATACAGTGTGGCACAGCTGCCCTGCTTCTCCATGGCCCTGCAGATCCTCCTGGCAGCTGCCCCGTATTGGTAGCACCCAACCGAGCAGAGCACCCAACCCGCCCCATCCTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004226-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=60.5)
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGATGGGGAACACCGTG
R:
ACACAGCTCCAAGGAAGAGGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]