HsaEX6063423 @ hg38
Exon Skipping
Gene
ENSG00000148344 | PTGES
Description
prostaglandin E synthase [Source:HGNC Symbol;Acc:HGNC:9599]
Coordinates
chr9:129738331-129753019:-
Coord C1 exon
chr9:129752887-129753019
Coord A exon
chr9:129748655-129748737
Coord C2 exon
chr9:129738331-129739860
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTCAACTGGTATATTTCAGGCC
3' ss Score
7.05
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCCAGAGATGCCTGCCCACAGCCTGGTGATGAGCAGCCCGGCCCTCCCGGCCTTCCTGCTCTGCAGCACGCTGCTGGTCATCAAGATGTACGTGGTGGCCATCATCACGGGCCAAGTGAGGCTGCGGAAGAAG
Seq A exon
GCCTTTGCCAACCCCGAGGATGCCCTGAGACACGGAGGCCCCCAGTATTGCAGGAGCGACCCCGACGTGGAACGCTGCCTCAG
Seq C2 exon
GGCCCACCGGAACGACATGGAGACCATCTACCCCTTCCTTTTCCTGGGCTTCGTCTACTCCTTTCTGGGTCCTAACCCTTTTGTCGCCTGGATGCACTTCCTGGTCTTCCTCGTGGGCCGTGTGGCACACACCGTGGCCTACCTGGGGAAGCTGCGGGCACCCATCCGCTCCGTGACCTACACCCTGGCCCAGCTCCCCTGCGCCTCCATGGCTCTGCAGATCCTCTGGGAAGCGGCCCGCCACCTGTGACCAGCAGCTGATGCCTCCTTGGCCACCAGACCATGGGCCAAGAGCCGCCGTGGCTATACCTGGGGACTTGATGTTCCTTCCAGATTGTGGTGGGCCCTGAGTCCTGGTTTCCTGGCAGCCTGCTGCGCGTGTGGGTCTCTGGGCACAGTGGGCCTGTGTGTGTGCCCGTGTGTGTGTATGTGTGTGTGTATGTTTCTTAGCCCCTTGGATTCCTGCACGAAGTGGCTGATGGGAACCATTTCAAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148344-'0-11,'0-3,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.162 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=61.9)
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGGTCATCAAGATGT
R:
GGAAGACCAGGAAGTGCATCC
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains