DreEX0059219 @ danRer10
Exon Skipping
Gene
ENSDARG00000020136 | ptges
Description
prostaglandin E synthase [Source:ZFIN;Acc:ZDB-GENE-050407-2]
Coordinates
chr5:32739609-32747840:+
Coord C1 exon
chr5:32739609-32739823
Coord A exon
chr5:32740090-32740172
Coord C2 exon
chr5:32747143-32747840
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATTTGATATTTGTGTATTAGGCG
3' ss Score
5.51
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTGCCAAGTATAATGAGGAATGGGAGGGCTTAACGGACTGGCTTCCCATATAAAACCTCCAAACACGACTATGCTACAAAGTTTACACAGAGAGATAGAGGCTCAAGATGCTCGGGAGCGACATACAGTTGTGCTTCATCTTCTACAGCACGCTTTTAATCTTGAAGATGTACATTATTGCCATCATCACGGGCCAAGTGAGACTTCGGAAAAAG
Seq A exon
GCGTTTGCTAACCCAGAGGACGCCGAGAGACACGGAGGTGTGCAGTTCTGCCGCACGGATCCATATGTGGAGCGCTGTAGGAG
Seq C2 exon
AGCACAGCAGAATGACATGGAGAACATTTTGCCCTTTTTATTTCTTGGAGCGGTCTACTCCATGACAAGCCCATCATATGCAGCAGCACAACTTCATTTCCTCATCTTCTTCCTGGGTCGAGTTCTTCACAGCGTTGCATATCTGCTGGCACTAAAAGCACCGACACGTTCATTGGCCTATGTCATCGCTCAGGTGCCTTGCATTTCAATGGCCATACAGATACTCATGGAAGTGGCCTCATTCGCATGACCCAGTCATATATTCAGCTCTGAGACTGGTGAAGACTATGATCTGGACTGCTGCTTTGGTGGACTTACAGCATCTCAACAGTAATAGAATTCACATTTAACTTTGAGATTAGACTTGATTGTTTATGACTGACAATAGCCCTCCTCTGAAACTGCTGCAGTCATTGCCCTCATTTATGTACTGGACACTACAGTTTGTTTTGCGTATTGCCATCTTGTTTTACTATTCAAATGAAGGTATTTTTACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020136_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=72.2)
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGCCATCATCACGGGCC
R:
GCTGTGAAGAACTCGACCCAG
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]