RnoEX0070958 @ rn6
Exon Skipping
Gene
ENSRNOG00000006320 | Ptges
Description
prostaglandin E synthase [Source:RGD Symbol;Acc:62076]
Coordinates
chr3:9727408-9738752:-
Coord C1 exon
chr3:9738584-9738752
Coord A exon
chr3:9736227-9736309
Coord C2 exon
chr3:9727408-9728409
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTCAGCTACTGTGTTTCAGGCT
3' ss Score
5.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTCAGTCCCGGTGTCCCGGAGTCCAGGCTGGCTAGCTGAGATGACTTCCCTGGGTTTGGTGATGGAGAACAGCCAGGTGCTCCCCGCCTTTCTGCTCTGCAGCACACTGCTGGTCATCAAGATGTACGCGGTGGCTGTCATCACAGGCCAAGTCAGGCTGCGGAAGAAG
Seq A exon
GCTTTTGCCAACCCCGAGGACGCGTTGAAACGTGGAGGTCTCCAGTACTGCAGGAGTGACCCAGATGTGGAGCGCTGCCTCAG
Seq C2 exon
AGCCCACCGCAACGACATGGAGACGATCTACCCCTTCCTCTTCCTTGGTTTCGTCTACTCATTCCTGGGACCCAACCCTCTCATCGCCTGGATACATTTCCTCGTGGTCCTCACAGGCCGTGTGGTACACACCGTGGCCTACCTGGGCAAAATGAACCCACGCATTCGCTCCGGGGCCTATGTTCTGGCCCAGTTCGCCTGTTTCTCCATGGCCCTACAGATCCTCTGGGAAGTGGCCCACCATCTGTGACCAGCAGCTGAAGCCTCCTCAGATACCACAATGGGGGACGGAGCCATGAAGGCTGAACCAGAGGACTTGGTGCCCCTTCTAGAACAGGGATGGGCTCAGGTCCAGGGTTCCTGGCTAAGCTAGGTGTGTGGATCTCTGAGCCTAATGTGCAAATGTGTGTCTTAGCCTTTTGGGACCCTGGGTGATGTGTCCGATTAGAACCGCTTACAGATTGACAGAACATCCTTCACCTCACAAATGCCTTAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006320-'1-1,'1-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=60.5)
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTGGGTTTGGTGATGG
R:
AACCAAGGAAGAGGAAGGGGT
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]