HsaEX6063423 @ hg19
Exon Skipping
Gene
ENSG00000148344 | PTGES
Description
prostaglandin E synthase [Source:HGNC Symbol;Acc:9599]
Coordinates
chr9:132500610-132515326:-
Coord C1 exon
chr9:132515166-132515326
Coord A exon
chr9:132510934-132511016
Coord C2 exon
chr9:132500610-132502139
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTCAACTGGTATATTTCAGGCC
3' ss Score
7.05
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGATCACACCCACAGTTGAGCTGCGCTGGCCAGAGATGCCTGCCCACAGCCTGGTGATGAGCAGCCCGGCCCTCCCGGCCTTCCTGCTCTGCAGCACGCTGCTGGTCATCAAGATGTACGTGGTGGCCATCATCACGGGCCAAGTGAGGCTGCGGAAGAAG
Seq A exon
GCCTTTGCCAACCCCGAGGATGCCCTGAGACACGGAGGCCCCCAGTATTGCAGGAGCGACCCCGACGTGGAACGCTGCCTCAG
Seq C2 exon
GGCCCACCGGAACGACATGGAGACCATCTACCCCTTCCTTTTCCTGGGCTTCGTCTACTCCTTTCTGGGTCCTAACCCTTTTGTCGCCTGGATGCACTTCCTGGTCTTCCTCGTGGGCCGTGTGGCACACACCGTGGCCTACCTGGGGAAGCTGCGGGCACCCATCCGCTCCGTGACCTACACCCTGGCCCAGCTCCCCTGCGCCTCCATGGCTCTGCAGATCCTCTGGGAAGCGGCCCGCCACCTGTGACCAGCAGCTGATGCCTCCTTGGCCACCAGACCATGGGCCAAGAGCCGCCGTGGCTATACCTGGGGACTTGATGTTCCTTCCAGATTGTGGTGGGCCCTGAGTCCTGGTTTCCTGGCAGCCTGCTGCGCGTGTGGGTCTCTGGGCACAGTGGGCCTGTGTGTGTGCCCGTGTGTGTGTATGTGTGTGTGTATGTTTCTTAGCCCCTTGGATTCCTGCACGAAGTGGCTGATGGGAACCATTTCAAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148344-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.162 C2=0.000
Domain overlap (PFAM):
C1:
PF0112413=MAPEG=PU(19.8=61.9)
A:
PF0112413=MAPEG=FE(20.6=100)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGGTCATCAAGATGT
R:
GGAAGACCAGGAAGTGCATCC
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)