BtaEX6046658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020311 | USP20
Description
Bos taurus ubiquitin specific peptidase 20 (USP20), mRNA. [Source:RefSeq mRNA;Acc:NM_001105333]
Coordinates
chr11:100260162-100263677:+
Coord C1 exon
chr11:100260162-100260275
Coord A exon
chr11:100261327-100261405
Coord C2 exon
chr11:100263230-100263677
Length
79 bp
Sequences
Splice sites
3' ss Seq
CGGATTTGGTCTTCCTACAGCCC
3' ss Score
7.58
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCCCCGCTCACCCAGTTCTTCTTGGAGTGTGGAGGCCTGGTCCGCACAGACAAGAAGCCAGCCCTGTGCAAAAGTTATCAGAAGCTGGTCTCTGAGGTCTGGCACAGGAAACG
Seq A exon
CCCCAGCTATGTGGTTCCCACCAGCCTGTCCCATGGGATCAAGTTGGTCAACCCAATGTTCCGAGGCTATGCCCAGCAG
Seq C2 exon
GACACCCAGGAATTCTTGCGCTGCCTGATGGACCAGCTGCACGAGGAACTCAAGGAGCCCGTGGTGGCCACAGCGGCGGCGCTGACCGAGGCGCGGGACTCGGACTCGAGCGACACGGATGAGAAGCGGGAGGGTGACCGGAGCCCCTCAGAGGACGAGTTCCTGTCCTGCGACTCCAGCAGCGACCGCGGCGAGGGCGACGGGCAGGGGCGCAGCGGGGGAGGCTCCCAGGCCGAGGCGGAGCTGCTGATGGCGGACGAGGCGGGCCGCGCCATCTCCGAGAAGGAGCGCATGAAGGACCGCAAGTTCTCGTGGGGCCAGCAGCGCACCAACTCGGAGCAGGTGGACGAGGACGCCGACGTGGACACCGCCATGGCCGCCCTGGAGCAGCAGCCCCCGGAGACGCAGCCCCCCTCCCCGCGGTCCACCAGTCCCTGCCGGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020311-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.873
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(7.1=100)
A:
PF0044324=UCH=FE(4.8=100)
C2:
PF0044324=UCH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCACCCAGTTCTTCTTG
R:
CTCCTTGAGTTCCTCGTGCAG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]