GgaEX1062492 @ galGal3
Exon Skipping
Gene
ENSGALG00000004142 | F1P4F0_CHICK
Description
NA
Coordinates
chr17:6271020-6274067:+
Coord C1 exon
chr17:6271020-6271133
Coord A exon
chr17:6272246-6272324
Coord C2 exon
chr17:6273641-6274067
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCCATATCTAAACAGGCC
3' ss Score
10.06
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
Seq A exon
GCCAAGTTATGTTGTTCCAAGCAGTCTGTCCCATGGAATTAAACTCGTCAACCCCATGTTCCGAGGCTATGCACAGCAG
Seq C2 exon
GACACTCAGGAGTTCCTGCGCTGCCTGATGGACCAGCTTCACGAAGAACTGAAGGAACCAATTGTCGCAGAGACACGAGATTTGGATATGGGTGACCAGGATGACAAGCGCGAGGGAGACCGAAGTCCTTCGGAGGATGAGTTCCTCTCCTGTGACTCAAGCAGTGACAGGGGTGAAGGAGATGGTCAAAGCCGGACCACAGGGAGCATGGCAGAGACAGAGTTGTTGATCCAGGATGAAGGAGGGAGAGGGATCTCTGAAAAAGAGAGGATGAAGGACAGAAAGTTCTCCTGTGGCCATCGGCGCAGCAACTCGGAGCAGGTGGATGAGGATGCAGATGTTGATACCACTATGATGCCAGTGGATGGCAGAGCCTCACCTGAGATGCTCCCAGCTCCCCGTCCTGCCAGCCCATGCAGGACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'7-9,'7-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.822
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(55.9=100)
A:
PF0044324=UCH=FE(4.9=100)
C2:
PF0044324=UCH=FE(26.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAATGTGGTGGTCTGGT
R:
CCAAATCTCGTGTCTCTGCGA
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]