RnoEX0097087 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9839238-9843727:+
Coord C1 exon
chr3:9839238-9839351
Coord A exon
chr3:9840616-9840694
Coord C2 exon
chr3:9843280-9843727
Length
79 bp
Sequences
Splice sites
3' ss Seq
CAGGTTTGCTCTCCCCACAGGCC
3' ss Score
10.59
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCCCCACTCACCCAGTTCTTCCTGGAGTGTGGTGGCCTGGTGCGAACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTCTGGCACAAGAAACG
Seq A exon
GCCAAGCTATGTGGTCCCCACCAGCCTATCCCATGGGATCAAGTTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAG
Seq C2 exon
GACACCCAGGAGTTCCTACGCTGCCTGATGGACCAGCTTCACGAGGAGCTCAAGGAGCCCATGGTAGCTGCTGTGGCAGCTCTCACTGATGCTCGGGACTCAGATTCCAGTGACACAGATGAGAGGCGTGATGGCGACCGGAGCCCTTCAGAGGACGAGTTTCTGTCCTGTGACTCGAGCAGTGACAGGGGTGAGGGTGATGGGCAGGGCCGTGGTGGAGGCAGCTCAAAGGCTGAGATGGAGCTGCTGATCTCAGACGAGGCGGGCCGAGCCATCTCTGAGAAAGAGCGAATGAAGGACCGCAAGTTCTCCTGGGGCCAGCAGCGCACCAACTCGGAGCAAGTGGATGAGGACGCTGATGTGGACACAGCCATGGCCTCCCTTGACGAACAATCTAGAGAGGCCCAGCCACCGTCACCAAGGCCTACCAGCCCCTGCCAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.847
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(13.0=100)
A:
PF0044324=UCH=FE(4.8=100)
C2:
PF0044324=UCH=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAGCCTTGTGCAAAAG
R:
TGGAATCTGAGTCCCGAGCAT
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]