GgaEX1062492 @ galGal4
Exon Skipping
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5715021-5718068:+
Coord C1 exon
chr17:5715021-5715134
Coord A exon
chr17:5716247-5716325
Coord C2 exon
chr17:5717642-5718068
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCCATATCTAAACAGGCC
3' ss Score
10.06
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
Seq A exon
GCCAAGTTATGTTGTTCCAAGCAGTCTGTCCCATGGAATTAAACTCGTCAACCCCATGTTCCGAGGCTATGCACAGCAG
Seq C2 exon
GACACTCAGGAGTTCCTGCGCTGCCTGATGGACCAGCTTCACGAAGAACTGAAGGAACCAATTGTCGCAGAGACACGAGATTTGGATATGGGTGACCAGGATGACAAGCGCGAGGGAGACCGAAGTCCTTCGGAGGATGAGTTCCTCTCCTGTGACTCAAGCAGTGACAGGGGTGAAGGAGATGGTCAAAGCCGGACCACAGGGAGCATGGCAGAGACAGAGTTGTTGATCCAGGATGAAGGAGGGAGAGGGATCTCTGAAAAAGAGAGGATGAAGGACAGAAAGTTCTCCTGTGGCCATCGGCGCAGCAACTCGGAGCAGGTGGATGAGGATGCAGATGTTGATACCACTATGATGCCAGTGGATGGCAGAGCCTCACCTGAGATGCTCCCAGCTCCCCGTCCTGCCAGCCCATGCAGGACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'16-13,'16-11,22-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.813
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(42.7=100)
A:
PF0044324=UCH=FE(29.2=100)
C2:
PF0044324=UCH=FE(26.6=100)
Main Skipping Isoform:
ENSGALT00000006585fB591
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAATGTGGTGGTCTGGT
R:
CCAAATCTCGTGTCTCTGCGA
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]