DreEX0083725 @ danRer10
Exon Skipping
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32704340-32707670:+
Coord C1 exon
chr5:32704340-32704453
Coord A exon
chr5:32704605-32704683
Coord C2 exon
chr5:32707238-32707670
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGGCCCTCTGTCCAGGCC
3' ss Score
7.93
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
TCCTCCTTTGACTCAGTTTTTCCAGGATTGCAGTGGATTGGTGCGTACGGATAAGAAGCCGGCATTGTGTAAAAGCTATCAGAAGCTTATCTCTGAACTCTGGCACAAGAAACG
Seq A exon
GCCGAGTTATGTTGTGCCAACTACTCTGTTTCATGGAATCAAACTGGTGAACCCCATGTTTCGTGGCTATGCTCAACAG
Seq C2 exon
GACACTCAGGAGTTTTTGCGATGTCTGATGGACCAGCTTCACGAGGAGCTGAAGGAGCCTTTGTTTGACTGCAGCGGTGGCATCTCTGAAGTCGAGCCTGACCTCAGTCTGGACAGCTGTAATCTTGTGGACGGAGACCGAAGCCCCTCTGAAGACGAATTCCTGTCGTGTGACTCTGGATCAGGAAGCGAAAGGGGAGATGGAGAGCGTGCAGGAGGAGAAGCAGAGCTCCTCATTCAAGATGAATGTGTGGCAGTGAGAGGAACCGGAGGCATCTCGGAGAAAGAGAGGCTGAAGGAGAGAAGAGGAGAAGAGAGGACACGTGAAATGGATGAGGATGCAGATGTGGACACAGCTGCACAAGACGGACAGGCTGAGAGAGAAACTGAAACAGCGACACCAGCCACAGCTGTGCCGGCACCAGGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501_MULTIEX1-6/22=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.593
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(28.4=100)
A:
PF0044324=UCH=FE(19.4=100)
C2:
PF0044324=UCH=PD(34.3=46.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCGTACGGATAAGAAGCC
R:
GCTCGACTTCAGAGATGCCAC
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]