MmuEX0050859 @ mm9
Exon Skipping
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:30861904-30866133:+
Coord C1 exon
chr2:30861904-30862017
Coord A exon
chr2:30863299-30863377
Coord C2 exon
chr2:30865686-30866133
Length
79 bp
Sequences
Splice sites
3' ss Seq
CAGATTTGGTCTCCCCACAGGCC
3' ss Score
9.42
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCCCCGCTCACCCAGTTCTTCCTGGAGTGTGGTGGTCTGGTGCGCACAGACAAGAAGCCAGCCTTGTGCAAAAGTTACCAGAAGTTGATCTCTGAGGTGTGGCACAAGAAGCG
Seq A exon
GCCAAGCTATGTGGTCCCCACCAGCCTGTCCCATGGGATCAAGTTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAG
Seq C2 exon
GACACCCAGGAGTTCCTACGCTGCCTAATGGACCAGCTTCATGAGGAGCTCAAGGAGCCCATGGTCGCTGCTGTGGCAGCACTCACCGATGCTCGGGACTCCGATTCCAGTGACACAGATGAGAGGCGTGATGGCGACCGGAGCCCATCAGAGGACGAGTTTCTGTCCTGTGACTCGAGCAGTGACAGGGGTGAGGGTGATGGGCAGGGGCGTGGTGGAGGCAGCTCAAAGGCCGAGATGGAGCTGCTGATCTCAGATGAGGCGGGCCGAGCCATCTCTGAGAAGGAGCGGATGAAGGACCGCAAGTTCTCCTGGGGCCAGCAGCGCACCAACTCAGAGCAAGTGGATGAGGATGCAGATGTGGACACGGCCATGGCGTCCCTTGATGAGCAATCCAGAGAGGCCCAGCCACCATCACCAAGGTCCACCAGCCCCTGCCAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854-'17-17,'17-16,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.847
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(32.4=78.6)
A:
PF0044324=UCH=FE(4.8=100)
C2:
PF0044324=UCH=FE(27.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAGCCTTGTGCAAAAG
R:
TGTCACTGGAATCGGAGTCCC
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: