BtaEX6046949 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000382 | MED27
Description
Bos taurus mediator complex subunit 27 (MED27), mRNA. [Source:RefSeq mRNA;Acc:NM_001040546]
Coordinates
chr11:102054910-102194296:-
Coord C1 exon
chr11:102194152-102194296
Coord A exon
chr11:102126461-102126591
Coord C2 exon
chr11:102054910-102055003
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGTTCTCCTCTGCAGTTG
3' ss Score
9.01
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TGAGCTGGAACGTCTGAGCAACTTGGTGGGAAAGCCTTCTGAGAACCATCCTCTCCATAACAGCGGGCTGTTAAGTCTGGATCCCGTGCAGGACAAAACCCCTCTGTACAGTCAGCTCCTCCAGGCGTATAAATGGTCAAACAAG
Seq A exon
TTGCAGTACCACGCTGGTCTGGCATCTGGCCTTTTGAATCAACAGTCGTTGAAACGTTCTGCTAACCAGATGGGAGTGTCTGCTAAACGTAGACCAAAGGCTCAACCCACGACTCTCGTCTTACCGCCTCA
Seq C2 exon
ATATGTTGACGACGTGATTAGCCGCATCGACCGGATGTTCCCTGAAATGACCATCCACTTGTCCAGACCCAATGGGACATCCGCCATGCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000382-'3-14,'3-4,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.341 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAACGTCTGAGCAACTT
R:
CAGAAGCATGGCGGATGTCC
Band lengths:
236-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]