DreEX0045839 @ danRer10
Exon Skipping
Gene
ENSDARG00000009681 | med27
Description
mediator complex subunit 27 [Source:ZFIN;Acc:ZDB-GENE-040426-1601]
Coordinates
chr8:11897013-11947649:-
Coord C1 exon
chr8:11947505-11947649
Coord A exon
chr8:11917609-11917739
Coord C2 exon
chr8:11897013-11897106
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTCCTCTGTAGTTG
3' ss Score
9.97
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TGAGTTGGAGCGTCTCAGCACTTTGGTTGGCAGGCCGTCAGAGAGTCACCCCTTACACAACAGTGGACTGCTCAGTTTAGACCCTGTGCAGGACAAAACCCCTCTGTACAGCCAGCTGCTCCAGGCTTACAAATGGTCCAATAAA
Seq A exon
TTGCAGTATCATGCAGGTCTGGCCTCCAGTCTTCTGAACCAACAGTCACTCAAACGCTCAGCCAATCAGATGGGAACATCTGCCAAACGAAGACCCAAAGTCCAGCCAAGCACCCTCGCCCTTCCAACACA
Seq C2 exon
ATATGTGGATGATGTCATATCCAGAATTGGCCGAATGTTTCCAGACATGTCAATCGAGCTTTTCCGACCGAACGGGACATCAGCGGTTCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009681-'1-9,'1-4,3-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.386 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGCGTCTCAGCACTTT
R:
ATAGAACCGCTGATGTCCCGT
Band lengths:
234-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]