GgaEX1035816 @ galGal4
Exon Skipping
Gene
ENSGALG00000003683 | MED27
Description
mediator of RNA polymerase II transcription subunit 27 [Source:RefSeq peptide;Acc:NP_001264204]
Coordinates
chr17:6354138-6414404:-
Coord C1 exon
chr17:6414260-6414404
Coord A exon
chr17:6387760-6387828
Coord C2 exon
chr17:6354138-6354245
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTTCCTTCCCCAGCTG
3' ss Score
10.18
5' ss Seq
CAGATGGGG
5' ss Score
-1.27
Exon sequences
Seq C1 exon
TGAGCTGGAGCGTCTGAGCAATCTGGTTGGTAAACCATCTGAGAACCATCCCTTGCACAACAGCGGACTGCTGAGCCTGGATCCTGTTCAGGACAAAACGCCTCTTTACAGCCAACTTCTTCAAGCCTACAAATGGTCAAATAAG
Seq A exon
CTGCAGTACCATGCCGGGCTAGCATCTGGCCTTTTGAATCAGCAGTCTTTGAAACGCTCGGCCAACCAG
Seq C2 exon
GTTACCTTAGGAAAAGTGTTAAAAGTGATAGTGGTGATGCGGAGCCTCTTCATTGACCGGACCATAGTAAAAGGATACAATGAAAACGTCTATACTGACGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003683_MULTIEX1-1/5=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=0.318 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115713=Med27=PU(3.4=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCTGAGCAATCTGGTTG
R:
GCTCCGCATCACCACTATCAC
Band lengths:
182-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]