HsaEX7005669 @ hg38
Exon Skipping
Gene
ENSG00000160563 | MED27
Description
mediator complex subunit 27 [Source:HGNC Symbol;Acc:HGNC:2377]
Coordinates
chr9:131939381-132077586:-
Coord C1 exon
chr9:132077442-132077586
Coord A exon
chr9:132014337-132014467
Coord C2 exon
chr9:131939381-131939474
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTCTCTGCAGTTG
3' ss Score
11.13
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TGAGCTGGAACGTCTGAGCAATCTGGTAGGCAAGCCATCTGAGAACCATCCTCTTCATAACAGTGGGCTGTTAAGCCTGGATCCTGTGCAGGACAAAACTCCTCTCTATAGTCAACTCCTTCAAGCATATAAGTGGTCAAACAAG
Seq A exon
TTGCAGTACCATGCAGGACTAGCATCTGGCCTTTTAAATCAGCAGTCATTGAAGCGTTCCGCTAATCAGATGGGAGTATCTGCCAAACGTAGACCAAAGGCTCAGCCCACAACTCTTGTCCTACCACCTCA
Seq C2 exon
ATATGTTGATGATGTGATCAGCCGCATTGACAGGATGTTTCCTGAAATGTCCATCCACTTATCCAGACCCAATGGAACATCAGCAATGCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160563-'8-22,'8-7,18-22=AN
Average complexity
A_C3
Mappability confidence:
100%=92=94%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.345 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115713=Med27=PU(1.2=3.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGAACGTCTGAGCAA
R:
GCATTGCTGATGTTCCATTGGG
Band lengths:
234-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains