GgaEX1035816 @ galGal3
Exon Skipping
Gene
ENSGALG00000003683 | MED27
Description
NA
Coordinates
chr17:6995076-7045992:-
Coord C1 exon
chr17:7045848-7045992
Coord A exon
chr17:7019286-7019416
Coord C2 exon
chr17:6995076-6995169
Length
131 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTTCCTTCCCCAGCTG
3' ss Score
10.18
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGAGCTGGAGCGTCTGAGCAATCTGGTTGGTAAACCATCTGAGAACCATCCCTTGCACAACAGCGGACTGCTGAGCCTGGATCCTGTTCAGGACAAAACGCCTCTTTACAGCCAACTTCTTCAAGCCTACAAATGGTCAAATAAG
Seq A exon
CTGCAGTACCATGCCGGGCTAGCATCTGGCCTTTTGAATCAGCAGTCTTTGAAACGCTCGGCCAACCAGATGGGGGTATCTGCAAAACGCAGACCGAAAGCCCAGCCAACAACTCTCGTCTTACCTCCTCA
Seq C2 exon
ATACGTTGATGATGTGATCAATCGCATTGATAGGATGTTCCCTGAAATGTCTATCCAGCTCTCCCGGCCCAACGGGACCTCTGCAATGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003683-'1-8,'1-6,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=0.341 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCGTCTGAGCAATCTG
R:
CATTGCAGAGGTCCCGTTGG
Band lengths:
229-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]