BtaEX6047003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005189 | C11H9ORF9
Description
Bos taurus chromosome 11 open reading frame, human C9orf9 (C11H9orf9), mRNA. [Source:RefSeq mRNA;Acc:NM_001101193]
Coordinates
chr11:102956388-102961170:+
Coord C1 exon
chr11:102956388-102956563
Coord A exon
chr11:102959219-102959421
Coord C2 exon
chr11:102960153-102961170
Length
203 bp
Sequences
Splice sites
3' ss Seq
CGCCCCGCGGGCCCATTCAGGTG
3' ss Score
5.42
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCTCCTCCGCATCCCAGTGAGCAGGTAGAATGATGAATGAAGTAAAAGAGTCCCTGCGGAGCGTGGAGCAGAAGTACAAGATCTTCCAGCAGCAGCAATTCACCTTCATCGGGGCCCTGGAGCACTGCAGGGAGAACGCCCACGACAAGATCCGGCCCATCTCCAGCATCGGGCAG
Seq A exon
GTGCAGAGCTACATGGAGCACCACTGCAGCAACTCCACAGACAGGCGCATCCTGCTCATGTTCCTGGACATCTGCTCGGAGCTCAGCAAGCTCTGCCAGCACTTCGAGGCCCTGCACGCTGGCACCCCCGTCACCAACAACCTCCTCGAGAAATGCAAGACCCTCGTGAGCCAAAGCAATGACCTGAGCAGCCTGCGAGCCAA
Seq C2 exon
ATACCCCCACGACGTGGTGAACCACCTCAGCTGTGACGAGGCCCGGAACCACTACGGAGGTGTGGTCAGCCTCATCCCCATCATCCTAGACCTGATGAAAGAGTGGGTCGCCCACTCGGAGAAGCTGCCCCGCAAAGCGCTGCAGCAAGTGAGTGAGCCCCAGGCAGCCACGCGGGCCACCGCGCACGCTCCCCAGGCCTCCGGCACCCAGCCCCAGCTTCGGAAACAAAATTGTGGGCAACTGATACAGAACATCCCCAAACCTGGGGGGAAAGACCAAGGAAGTTCAAAACCACCCTGGAGACCACCTGGTGGGAAACTGTAGTTGGGAGCTGGGGGACCCGCCCGACCCCAGCCCTGCCCGACCCCACCGTGTTCCCTCCCATCCCATCCCGCGGGGCAGCCTGTAACTAAGCCTGGTTTCCACCAGTCGATCCATCTCTACTGGTGCTCACCATCTTCGCCACTTACTAATCCCCAGGGAGCCACCCCATGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005189-'3-7,'3-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.593
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(27.5=97.9)
A:
PF151201=DUF4561=FE(39.2=100)
C2:
PF151201=DUF4561=PD(32.2=50.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCCGGCCCATCTCCAG
R:
CCAGGTTTGGGGATGTTCTGT
Band lengths:
297-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]