DreEX6011369 @ danRer10
Exon Skipping
Gene
ENSDARG00000068130 | C5H9orf9
Description
chromosome 9 open reading frame 9 [Source:HGNC Symbol;Acc:HGNC:1367]
Coordinates
chr5:29069785-29071143:-
Coord C1 exon
chr5:29070981-29071143
Coord A exon
chr5:29070326-29070528
Coord C2 exon
chr5:29069785-29070135
Length
203 bp
Sequences
Splice sites
3' ss Seq
AAAACATTGTTTTTCCGCAGGTC
3' ss Score
10.68
5' ss Seq
ACAGTTAAG
5' ss Score
-12.18
Exon sequences
Seq C1 exon
GTTGAGCACTTTAACCGAGATGGCTGATGTCAGACAGCAGCTACTTTTCCTCGAGCAGAAATATAAACGTTTCAAACAACAACAGTTTATATTTATAAATGCTCTGGAGCGCTCAAGAGAACATGCAAGGGACAGAACAGAGCCTGTCTCCACCATAAAACAG
Seq A exon
GTCCAAAAGTACATGAATCACCATTGCAGCAATTCAACTGACAGGAGCATCTTTTTACTCTTTCTGGAAATTATTTCTGATCTTGAAGGTGTTTTAAAACAACTGGAGTCCTCAGTGTCCAGCAGAAACACTTCATGTGAGGGATTGGAGACCTGCAAAGAGCTCCTGAACCCCAGCAGCAACATCAGTCAGCAAAGGGCACA
Seq C2 exon
CTATCCACACAATGTGATCAACCGGCTGAGCTGTGATGAAGCAAGAAATTTCTATGGTGGGATTGTGAGCATTATTCCACTGACTTTGGACCTTCTCGCTGCCTACATCAGAGGAAGTGCAAAACGTCTAAGTTCAGCATCTACAGTAACACCTAATCAAACGTTGACAAAGAATGTTGGAACCGGGATCGATGCTAGCCTTGAAAAAGACACCAGTAAGCACCAGAGAAGTAAGTCCTCAAAGAAGAAAAAAGGATCTGGTGGTTGGCATGCAGGAAAACCAGCCTGGAAGCCACCCGGAAATACAAGGAGATAAAAAAAAACTGATATTTACAGATGTTTTGTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068130-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.059 C2=0.571
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(27.3=97.9)
A:
PF151201=DUF4561=FE(39.0=100)
C2:
PF151201=DUF4561=PD(32.6=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAGCCTGTCTCCACCAT
R:
CATGCCAACCACCAGATCCTT
Band lengths:
300-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]