MmuEX6100025 @ mm10
Exon Skipping
Gene
ENSMUSG00000026809 | Spaca9
Description
sperm acrosome associated 9 [Source:MGI Symbol;Acc:MGI:1917237]
Coordinates
chr2:28692912-28696083:-
Coord C1 exon
chr2:28695907-28696083
Coord A exon
chr2:28693624-28693826
Coord C2 exon
chr2:28692912-28693059
Length
203 bp
Sequences
Splice sites
3' ss Seq
TGACATGCTGGCCTCTGCAGGTG
3' ss Score
9.17
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACCCTTTCTGTCCTGTGAGACCTAAGAGCAACAATGAATGAGGTGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTATCGAGCAG
Seq A exon
GTGCAGAGCTACATGGAACACTACTGCAATAACTCCACCCACCGGCGGATTCTGATCATGTTCATGGACATCTGCTCCGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCTGCACTCTGGCACCCCTGTCACCAACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAA
Seq C2 exon
GTATCCGCACGAAGTGGTTAACCACCTCAGCTGCGATGAGGCCAGGAACCACTATGGAGGCGTGGTCAGCCTCATCCCTATAGTCCTGGACTTTATGAAAGAGTGGATTGCTCATTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026809-'7-8,'7-6,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(28.1=97.9)
A:
PF151201=DUF4561=FE(40.1=100)
C2:
PF151201=DUF4561=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCTGTCCTGTGAGACC
R:
GGCAGCTTCTCAGAATGAGCA
Band lengths:
305-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types