MmuEX6100025 @ mm9
Exon Skipping
Gene
ENSMUSG00000026809 | 1700026L06Rik
Description
RIKEN cDNA 1700026L06 gene [Source:MGI Symbol;Acc:MGI:1917237]
Coordinates
chr2:28548432-28551603:-
Coord C1 exon
chr2:28551427-28551603
Coord A exon
chr2:28549144-28549346
Coord C2 exon
chr2:28548432-28548579
Length
203 bp
Sequences
Splice sites
3' ss Seq
TGACATGCTGGCCTCTGCAGGTG
3' ss Score
9.17
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACCCTTTCTGTCCTGTGAGACCTAAGAGCAACAATGAATGAGGTGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCACCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTATCGAGCAG
Seq A exon
GTGCAGAGCTACATGGAACACTACTGCAATAACTCCACCCACCGGCGGATTCTGATCATGTTCATGGACATCTGCTCCGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCTGCACTCTGGCACCCCTGTCACCAACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAA
Seq C2 exon
GTATCCGCACGAAGTGGTTAACCACCTCAGCTGCGATGAGGCCAGGAACCACTATGGAGGCGTGGTCAGCCTCATCCCTATAGTCCTGGACTTTATGAAAGAGTGGATTGCTCATTCTGAGAAGCTGCCTCGCAAAGTGCTGCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026809-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(37.0=97.9)
A:
PF151201=DUF4561=FE(52.8=100),PF0061118=FCH=PU(89.6=63.2)
C2:
PF151201=DUF4561=FE(29.3=100),PF0061118=FCH=PD(8.3=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCTGTCCTGTGAGACC
R:
GGCAGCTTCTCAGAATGAGCA
Band lengths:
305-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: