GgaEX1012285 @ galGal3
Exon Skipping
Gene
ENSGALG00000003509 | C9orf9
Description
NA
Coordinates
chr17:7364841-7368205:+
Coord C1 exon
chr17:7364841-7364996
Coord A exon
chr17:7367469-7367671
Coord C2 exon
chr17:7368058-7368205
Length
203 bp
Sequences
Splice sites
3' ss Seq
CCCCATGTTGCACTCTGCAGGTA
3' ss Score
8.26
5' ss Seq
TAAGTACGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
CAGAGGGAAAACATGAACGAGGTAAAGGATACTCTAAAAGTCATAGAAGACAACTACAAGCTCTTCCTGCAGCAGCAGTTCACGTTTGTTGGAGCTCTGCAACACACCCGAGAGAACGCACACGACATGATCAGACCCGTGGCGAGCATCAGCCAG
Seq A exon
GTACAGTCCTACATGGACCACCACTGTAACAACTTAACGGACAGGCGTATCCTCACCATGTTCCTAAACATCTGTAATGACCTGAGCAATCTCTGCCACAAGCTGGAAACTCTACATCCTGGTAACAGCACAACCAATGAAATTTTGGAAAGATGCAAGCTGCTCCTTAACCACAGCAATGATCTGAGCACCATCCGAGCTAA
Seq C2 exon
ATACCCCCACGATGTTGTGAATCACCTGAGCTGTGACGAAGCAAAGAATCACTTTGGAGGTGTGGTGAGCCTCATCCCCATTGTCCTAGATGGTGTGAAGGAGTGGCTATCCCACACTGAGAAGCTGCCGCGACGCATGCTGTGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003509-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(28.1=97.9)
A:
PF151201=DUF4561=FE(40.1=100),PF0114712=Crust_neurohorm=PU(95.6=95.6)
C2:
PF151201=DUF4561=FE(29.3=100),PF0114712=Crust_neurohorm=PD(2.9=4.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGAAAACATGAACGAGGT
R:
ATTACACAGCATGCGTCGCG
Band lengths:
304-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]