HsaEX0011749 @ hg38
Exon Skipping
Gene
ENSG00000165698 | SPACA9
Description
sperm acrosome associated 9 [Source:HGNC Symbol;Acc:HGNC:1367]
Coordinates
chr9:132883911-132890031:+
Coord C1 exon
chr9:132883911-132884091
Coord A exon
chr9:132887369-132887571
Coord C2 exon
chr9:132888290-132890031
Length
203 bp
Sequences
Splice sites
3' ss Seq
TGTGGCGGCGGCCCTTGCAGGTG
3' ss Score
7.68
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATTCCTCTTCTCCTGTAAATGACCACAGAGGAAGACAATGAATGAGGTGAAAGAATCCCTTCGCAGCATCGAGCAGAAGTACAAGCTCTTCCAGCAGCAGCAGCTCACCTTCACCGCCGCTCTGGAGCACTGCAGGGAGAACGCCCACGACAAGATCCGGCCCATCTCCAGCATTGGACAG
Seq A exon
GTGCAGAGCTACATGGAACACTACTGCAACAGCTCCACAGACCGGCGGGTTCTGCTCATGTTCCTGGACATCTGTTCAGAGCTGAATAAGCTCTGCCAGCACTTTGAGGCCGTGCACTCTGGCACCCCAGTCACCAACAACCTCCTGGAGAAATGCAAAACCCTCGTTAGCCAAAGCAACGACTTAAGCAGCCTCAGAGCAAA
Seq C2 exon
ATACCCTCATGATGTGGTGAACCACCTCAGCTGTGACGAGGCCCGGAACCACTACGGCGGCGTGGTCAGCCTCATCCCCCTCATCCTAGACTTAATGAAAGAATGGATCGCCCACTCCGAGAAGTTGCCGCGCAAGGTGCTGCAGCACGTGAGTGAGCCCCAGGCGCACCAGGAGAGCACCAGGGGAGCCGCTCGTCCTGCCCAGGCCATAGGGACCCAGCCCAGGGCCACTAAACACAAGTGTAGACAGCTCACAAAAGCCAGCCTCAAACCCAGGGGATGTTCAAAACCACCCTGGAGGCCTCCTGGTGGGAAATTGTAACTCAGAGCCAGGAGCTCCGTCGGCGGAGAGCTTTGCTGTTTAATTTGGATTTTACTGGTTGGTCCTTTTTTCACTGGTACCCATGGACCCTGCCACTTACTAACCCCAAGGGAATCAGCCAATATATTACTGAGACTTCCTCTCTCTCTTCTTGCTTTAACTTCTTTTTTTTTTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165698_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.522
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(28.1=97.9)
A:
PF151201=DUF4561=FE(40.1=100)
C2:
PF151201=DUF4561=PD(32.6=51.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCCCACGACAAGATCC
R:
GCTGGCTTTTGTGAGCTGTCT
Band lengths:
308-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development