RnoEX0084984 @ rn6
Exon Skipping
Gene
ENSRNOG00000012697 | Spaca9
Description
sperm acrosome associated 9 [Source:RGD Symbol;Acc:727909]
Coordinates
chr3:7270685-7273857:-
Coord C1 exon
chr3:7273681-7273857
Coord A exon
chr3:7271387-7271589
Coord C2 exon
chr3:7270685-7270832
Length
203 bp
Sequences
Splice sites
3' ss Seq
TGACATGATGGCCTCTGCAGGTG
3' ss Score
7.21
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACCCTTCCTGTCCTGTGGGACCTAACAGCAACAATGAATGAGGTGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGTACAAACTCTTTCAGCAGCAACAGTTCACCTTCATTGCTGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTATCGAGCAG
Seq A exon
GTGCAGAGCTACATGGAACATTACTGCAATAACTCCACCGACCGGCGGATTCTGCTCATGTTCATGGACATCTGCTCGGAGCTCAACAAACTGTGCCAGCACTTTGAGGCCTTGCACTCCGGCACCCCTGTCACCAACAGCCTTCTCGAGAAATGCAAAACCCTGGTTAGCCAGAGCAATGACTTGAGCATCCTCAGAGCAAA
Seq C2 exon
GTACCCGCATGATGTGGTGAACCACCTCAGCTGTGATGAGGCCAGGAACCACTATGGAGGTGTGGTCAGCCTCATCCCCATAGTCCTGGACCTAATGAAAGAGTGGATCGCTCATTCCGAGAAGCTGCCTCGCAAAGTGCTGCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012697_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(28.1=97.9)
A:
PF151201=DUF4561=FE(40.1=100)
C2:
PF151201=DUF4561=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGGGACCTAACAGCAA
R:
GAGGCAGCTTCTCGGAATGAG
Band lengths:
298-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]