GgaEX1012285 @ galGal4
Exon Skipping
Gene
ENSGALG00000003509 | C9ORF9
Description
chromosome 17 open reading frame, human C9orf9 [Source:RefSeq peptide;Acc:NP_001264636]
Coordinates
chr17:6715591-6718961:+
Coord C1 exon
chr17:6715591-6715753
Coord A exon
chr17:6718225-6718427
Coord C2 exon
chr17:6718814-6718961
Length
203 bp
Sequences
Splice sites
3' ss Seq
CCCCATGTTGCACTCTGCAGGTA
3' ss Score
8.26
5' ss Seq
TAAGTACGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
ATTCCAACAGAGGGAAAACATGAACGAGGTAAAGGATACTCTAAAAGTCATAGAAGACAACTACAAGCTCTTCCTGCAGCAGCAGTTCACGTTTGTTGGAGCTCTGCAACACACCCGAGAGAACGCACACGACATGATCAGACCCGTGGCGAGCATCAGCCAG
Seq A exon
GTACAGTCCTACATGGACCACCACTGTAACAACTTAACGGACAGGCGTATCCTCACCATGTTCCTAAACATCTGTAATGACCTGAGCAATCTCTGCCACAAGCTGGAAACTCTACATCCTGGTAACAGCACAACCAATGAAATTTTGGAAAGATGCAAGCTGCTCCTTAACCACAGCAATGATCTGAGCACCATCCGAGCTAA
Seq C2 exon
ATACCCCCACGACGTTGTGAATCACCTGAGCTGTGACGAAGCAAAGAATCACTTTGGAGGTGTGGTGAGCCTCATCCCCATTGTCCTAGATGGCGTGAAGGAGTGGCTATCCCACACTGAGAAGCTGCCACGACGCATGCTGTGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003509-'4-4,'4-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF151201=DUF4561=PU(27.5=97.9)
A:
PF151201=DUF4561=FE(39.2=100),PF0114712=Crust_neurohorm=PU(97.0=95.6)
C2:
PF151201=DUF4561=FE(28.7=100),PF0114712=Crust_neurohorm=PD(1.5=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGAAAACATGAACGAGGT
R:
ATTACACAGCATGCGTCGTGG
Band lengths:
304-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]