BtaEX6047028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021373 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr11:103080227-103088180:+
Coord C1 exon
chr11:103080227-103080404
Coord A exon
chr11:103086582-103086801
Coord C2 exon
chr11:103087982-103088180
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGGCCTCACCGCAGATC
3' ss Score
9.01
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGTGGGCCTGACTGGACTGGCAGGGATGGCGGCGGCGGCGGCAGACGCTCGGCCGGGCGCCGCCATCCCGGTGGAGCTGCGGCGCGAGAGGCGCATGGTGTGTGTGGAGTACCCGGGCGTGGTGCGCGACGTGTCCAAGATGCTGCGGACCTTGGGCGGCGAGGAAGGCGTCTCCCGG
Seq A exon
ATCTACGCAGATGCCACCAAGAGGCTGGAGCTTTACTTCCGGCCCAAGGACCCCTACTGCCACCCCGTGTGTGCCAACCGCTTCAGTACCAACAGCTTGCTGCTCCGGATCAAGCGGAAGACCAGGCGACAGAGTGGGGTGCTGGGGCCTGAGGCTCGCCCCCAGGTCACGTACGACATAGAGAGCCTTGGAGTCATCTCCACCGTCTTCAAATTTCAAG
Seq C2 exon
GGATGTCTGACTTCCAGTACCTGGCGGTGCACACAGAGGCGGACGGCAGGCAGGTGTCCATGTACGACAAGGTGCTCATGCTCAAGCCCCAGAAGGAGAGCTTCTTCCACCAGGACCTGCCGCTCTACATCCCCCCACCCATCTTCTCCAGGCTGGACACGCCGGTGGACTACTACTACCGCCCAGAGACACAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021373-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.068 C2=0.030
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(50.0=54.9)
A:
PF097344=Tau95=FE(24.3=100)
C2:
PF097344=Tau95=FE(22.0=100)
Main Skipping Isoform:
ENSBTAT00000028493fB3161
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGGACTGGCAGGGAT
R:
GATGTAGAGCGGCAGGTCCT
Band lengths:
302-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]