HsaEX0029015 @ hg38
Exon Skipping
Gene
ENSG00000148308 | GTF3C5
Description
general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr9:133030675-133050978:+
Coord C1 exon
chr9:133030675-133031164
Coord A exon
chr9:133042087-133042306
Coord C2 exon
chr9:133050783-133050978
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGGCCTTGCCACAGATC
3' ss Score
8.16
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GATTCTCATTGGCTGAAGTCGAGGGAGGTTTGTGTCTTATTATCCTCCGGGTCCCTCGCTGGCTAGTAGGAGAGACTGGTGCTTGCCCCGCCCGGTGGACTAACTCGCTTAATTTTAAATAAAAAGTCGAGGACACGGCGGTCGTTTTCCCGAAGACATGGGCCCTCCCATGGGCCATTTGCTCCCTGGAGGCCCTCGCGTCTTGCTGAGCCCGGGGAGTTAGGATGACGCGAGCGGTGAGGGAGCCCGGAACGATTCCTTCGCGGAACAATTGAGGCGAGGCCTTTGGGAGTACTTTGTGGGACGGACCCTGGCGGGCCCTGCCAGACGCACAGGGATGGCGGCGGAGGCGGCCGATTTGGGGCTGGGGGCCGCCGTCCCCGTGGAGCTGAGGCGGGAGCGACGCATGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGTGGCTAAGATGCTGCCGACTCTGGGCGGCGAGGAAGGCGTCTCCCGG
Seq A exon
ATCTACGCAGACCCCACCAAGAGGCTGGAGCTGTACTTCCGGCCCAAGGACCCATACTGCCACCCAGTGTGCGCCAACCGCTTCAGTACCAGCAGCCTGCTGCTCCGCATCAGGAAGAGAACGAGGCGGCAGAAAGGGGTGCTGGGCACTGAGGCCCACTCCGAGGTCACATTTGACATGGAGATCCTTGGCATCATCTCCACCATTTACAAATTTCAGG
Seq C2 exon
GGAAGGCTACAACAATCCCCCCATCTCAGGTGAGAATCTGATTGGCCTGAGCAGAGCCCGGCGCCCCCACAATGCCATCTTTGTCAACTTTGAGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGCACTAACCCCGTGGACCGGAAGGTGGAGGAGGAGCTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148308_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
PF097344=Tau95=FE(35.3=100)
C2:
PF097344=Tau95=FE(18.4=100),PF097344=Tau95=PU(3.8=2.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCCTTTGGGAGTACTTT
R:
ACAAAGATGGCATTGTGGGGG
Band lengths:
297-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development