GgaEX0004503 @ galGal4
Exon Skipping
Gene
ENSGALG00000003441 | GTF3C5
Description
general transcription factor 3C polypeptide 5 [Source:RefSeq peptide;Acc:NP_001025855]
Coordinates
chr17:6780509-6781432:+
Coord C1 exon
chr17:6780509-6780678
Coord A exon
chr17:6780857-6781061
Coord C2 exon
chr17:6781234-6781432
Length
205 bp
Sequences
Splice sites
3' ss Seq
GCGTGCCGTCTCTGACACAGATC
3' ss Score
7.44
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
GGGGGACGGACCGGGGGGCGATGGCGGCGGATGGGCCGCGCACGGAGCGGGGCTCTGGGGTGTTGGAGCTGCCCAGCACTCCGCGCTTGGTGTGCGTGGAGTACCCCGGGCTGGTGCGGGATGTCAGCGCGATGCTGCGGACTCTGGGAGGAGAGGAAGGGGTGTCGCGG
Seq A exon
ATCTACGCGGACCCCGGCAAAAGGTTGGAGCTGTATTTCCGCCCCAAGGACCCCTACTGCCATCCCGTGTGTGCCAACCGCTTCCCCGCCTCCGCCATGCTGCTCAGGGTGAAGAGGAGGAGCAGGAGGAAGCGGCTGGGAGAGCAGGACGTCCAGTTTGAAATGGAAATTATGGGGATCGTCACGACGGTTTACAAATTTCAGG
Seq C2 exon
GAATGTCGGATTTCCAGTACCTAGCGATGCATTCTGGTCCCGATGGCAAACAAACCTCCATGTATGACAAAGTCCTCATGCTCAAGCCAGAGAAGGAGGAATTTTTCAATAGGGAATTACCTCTGTACATCCCTCCACCAATTTTCTCACGTCTGGACACTCCTGTTGACTATTACTATCGGCCAGATGTCCAACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003441_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.260 A=0.014 C2=0.060
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(10.5=56.0)
A:
PF097344=Tau95=FE(25.5=100)
C2:
PF097344=Tau95=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCTCTGGGGTGTTG
R:
TCAACAGGAGTGTCCAGACGT
Band lengths:
292-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]