RnoEX0040558 @ rn6
Exon Skipping
Gene
ENSRNOG00000010981 | Gtf3c5
Description
general transcription factor IIIC subunit 5 [Source:RGD Symbol;Acc:1305173]
Coordinates
chr3:7158263-7164654:-
Coord C1 exon
chr3:7164268-7164654
Coord A exon
chr3:7161135-7161354
Coord C2 exon
chr3:7158263-7158461
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGGGCATTGCCACAGATC
3' ss Score
6.13
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
CCCCTTTGTCCAACCCTCTTCTTTTTAAAGTAAAAAGCCTCTAGGCCGCTGTGGGGTCGCAAAATGAACAGATGCCATGGCGCCCCGGTTCCTGGAGGCCTTTGAGTCTCCCTGATTTAAGGAGACGCGAAAGGTAAAGAGGATCGGAACAATTCCTTCGCGGAACCATTGAGGTGAAGCCTAGAGGAGCCATTTGAGAGCGGACGGCGGCGGGCCGGGACCGGACTGGTAGGCATGGAGGCGGTGGAGTCGGATGCGGACCCGAAGGCCGCCATCCCTGTGGACCTGCGGCGAGAACGGCGACTGGTGTGCGTGGAGTACCCGGGCGTGGTGCAAAACGAAGATAAGATGCTACAGACTCTGGGCGGCGAGGAAGGCGTCTCTCGA
Seq A exon
ATCTACACTGACCCCACCAAGAGGCTGGAGCTCTACTTCCGGCCCAAGGACCCATACTGCCATCCAGTGTGTGCTAACCGCTTCAGTACCAGTAGCCTGCTGCTCCGAGTCCGGAAAAGAACAAGGCGTCGCAGAGGTGTCCCGGGAGACGAGGCCCACCCCCACGTCACGTTCGATCTGGAAATCCTTGGCACCATCTCCACAATTTACAAATTCCAGG
Seq C2 exon
GAATGTCTGACTTCCAGTACTTGGCAGTGCACACAGAGACTGACGGCACGCACGTGTCCATGTACGACAGAGTGCTCATGCGCAAGCCTGAGAAGGAGGAGTTCTTCCATCAGGAGCTGCCACTCTACATCCCCCCGCCCATCTTCTCCAGGCTGGACACCCCCGTGGACTATTTCTATCGCCCTGAGACACAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010981-'0-1,'0-0,6-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.108 C2=0.090
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(9.3=54.9)
A:
PF097344=Tau95=FE(24.3=100)
C2:
PF097344=Tau95=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCCTAGAGGAGCCAT
R:
CGCATGAGCACTCTGTCGTAC
Band lengths:
297-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]