MmuEX6099994 @ mm9
Exon Skipping
Gene
ENSMUSG00000026816 | Gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1917489]
Coordinates
chr2:28433396-28436785:-
Coord C1 exon
chr2:28436651-28436785
Coord A exon
chr2:28435038-28435257
Coord C2 exon
chr2:28433396-28433594
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTGGCATTGCTGCAGATC
3' ss Score
7.63
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
TTGTGTATCCAGGTGATTGTGAAAGCCAGAAGAGGGCGTTGGACCACTTAGTGCTGTGATTACAGGTGGTTGTGCACTATATCCAATGTTTGGGTGCTGGGAACTGAACTCCAGTCTGGAAACAGCTCCTAACTT
Seq A exon
ATCTACACTGACCCTACCAAGAGGCTCGAACTCTACTTCCGGCCCAAGGACCCATACTGCCACCCTGTGTGTGCTAACCGTTTCAGTACCAGCAGCCTGCTGCTCCGGATCCGGAAAAGAACAAGGCGTCGGAGAGGTGTCCTGGGAGACGAGGCCCACCCCCAGGTCACGTTCAACTTGGAGATCATTGGCATCATCTCCACAATTTACAAATTCCAGG
Seq C2 exon
GAATGTCTGACTTCCAGTACTTGGCAGTGCACACAGAAGCTGGTGGCAAGCATGTTTCCATGTATGACAGAGTGCTCATGCGCAAGCCTGAGAAGGAGGAGTTCTTCCATCAGGAGCTACCACTCTACATCCCCCCACCCATCTTCTCCAGGCTGGACACCCCTGTGGACTATTTCTATCGCCCTGAGACACAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026816-'4-8,'4-7,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.030
Domain overlap (PFAM):
C1:
PF097344=Tau95=PD(25.0=58.8)
A:
PF097344=Tau95=FE(24.3=100)
C2:
PF097344=Tau95=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGACCACTTAGTGCTGT
R:
GCTGTGTCTCAGGGCGATAGA
Band lengths:
294-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: