MmuEX6099994 @ mm10
Exon Skipping
Gene
ENSMUSG00000026816 | Gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1917489]
Coordinates
chr2:28573377-28583189:-
Coord C1 exon
chr2:28582825-28583189
Coord A exon
chr2:28579518-28579737
Coord C2 exon
chr2:28573377-28573572
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTGGCATTGCTGCAGATC
3' ss Score
7.63
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
TTTTAAATTAAAAAGCCCCCAGTTCTGTGTGGTGTAGCAAAATAAACAGTTGCGGCGACGCACTTCTTCCTGGAGGCCTTCGAGTCTCCATGATTTAAGGAGACGAGAAAGGTAAGGAGGACCGGAACAATTCCTTCGCGGAACCTTTGAGGTGAGGCCTCGCGGAGCCATTTGAGAACGGACCGCGGCGGGCTGGAACCAGACTAGTAGGCATGGCGGCGGCGGAGCCGGATGCGGACCCGAAGGCCGCCATCCCTGTGGACCTGCGGCGGGAACGGCGCTTGGTGTGCGTGGAGTACCCGGGCGTAGTACGTAACGAGGCCAAGATGCTACAGACCCTGGGCGGCGAGGAAAGCGTCTCTCGA
Seq A exon
ATCTACACTGACCCTACCAAGAGGCTCGAACTCTACTTCCGGCCCAAGGACCCATACTGCCACCCTGTGTGTGCTAACCGTTTCAGTACCAGCAGCCTGCTGCTCCGGATCCGGAAAAGAACAAGGCGTCGGAGAGGTGTCCTGGGAGACGAGGCCCACCCCCAGGTCACGTTCAACTTGGAGATCATTGGCATCATCTCCACAATTTACAAATTCCAGG
Seq C2 exon
AGAAGGCTATCATAATCCCACCATCTCAGGGGAGAACCTGATTGGACTGAGTAGAGCCCGGCGCCCCCACAACGCCATCTTTGTCAACTTTGAGGACACTGAGGTTCCTGAACAGCCTTTGGAGGCTGCAGTCCAGACATGGAAGAAGGCCTGCACCAATCCCATAGATCAGAAGGTGGAAGAGGAGCTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026816_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.068 C2=0.076
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(87.5=54.9)
A:
PF097344=Tau95=FE(24.3=100)
C2:
PF097344=Tau95=FE(21.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAAGGAGGACCGGAACAA
R:
AGGTTCTCCCCTGAGATGGTG
Band lengths:
295-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types