DreEX0036615 @ danRer10
Exon Skipping
Gene
ENSDARG00000067979 | gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-060810-66]
Coordinates
chr21:11274625-11280640:+
Coord C1 exon
chr21:11274625-11275002
Coord A exon
chr21:11277107-11277305
Coord C2 exon
chr21:11280442-11280640
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCTGGGGTGTTTCTGGACAGACA
3' ss Score
5.82
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GCATGCGCACTGCCATCCCGGAACTAAAATTTTGTCCAAGAACTTTAAGTTCCACCCGGATGATTTTAACAAGAGAACATGTTTGTCTACACGCTGTTTACTAAAGCATTCAGTCATAAAAATACTCAATTATAAAGATGTTTTTACCTCATGCATAAGCGTCAAACGAAAATGGATTCTGTGATTACAAGCGAGGCGGTCTCATCAGACACAGAAGCGAGAAATACTGGAGAAAGCAGAGATGAAGCTGTTGTGTTGGGAAATACAGCAACATTAGCTCTTTCTGACACTAATCTAGTGTGTGTTGAATATCCAGCGGTGGTCAACAATGTGAACAGAATGCTGGACAGCATTGGAGGAGAACAAGGAGTGTCTAAA
Seq A exon
ACATATGCAGACTCTACAAAAAGAATTGAGCTCCGCTTTCGGCCGGGGGATCCGTTCTGTCATCCTGCTTATGGAAATCGCTACTCCTCCACCAACCTGCTGCTCAGAGTTCGCCGCAGGACACGCAAAGGGAACAATGCAGAGACCCAAATCAGCATGGAGATAGTGGGACTTATAGGAACCACCTATAAGTTTCAAG
Seq C2 exon
GAATGGCTGACTTTCAGTATCTGGCATCTCACAACAACCCAGAAGGCAACCAGGTCTCCCTGTACGACAAGATCATTTTGCGCAAACCAGAGAAAAAGGAATTCTACGACAACCCTGTGCCTCTTTTCATTCCTCCCCCTATTTTCTCTCGTCTGGACATGCCTGTGGATTACTTCTATCGGCCTGATGTAATGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067979-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(9.5=36.8)
A:
PF097344=Tau95=FE(22.4=100)
C2:
PF097344=Tau95=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACAAGCGAGGCGGTCTC
R:
CTGGTTGCCTTCTGGGTTGTT
Band lengths:
249-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]