BtaEX6047083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103430638-103431564:+
Coord C1 exon
chr11:103430638-103430739
Coord A exon
chr11:103431108-103431191
Coord C2 exon
chr11:103431439-103431564
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTACGGCCCCTCTCCTCCAGTCC
3' ss Score
8.23
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AGGGAGCGTGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCCTTCGCCGCCGGCCGCGTCTTCAGCATCAGCATGCTGGACACACTGCTGTATCAG
Seq A exon
TCCTTCGTGAAGGACTACATGATCCCCATCACCAGGCTGTTGCTGGGCTTGGACACCACGCCGGGCTCCGGCTACCTCTGTGCG
Seq C2 exon
ATGAAGATCTCGGAGGACGACCTGTGGATCCGCACCTATGGCCGCCTCTTCCAGAAGCTGTGCTCCTCCAGCGCCGAGATCCCTATCGGCATCTACAGGACCCAGTGCCACGTCTTCTCCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'38-36,'38-35,39-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACCTGGCCTTCATGTT
R:
GATAGGGATCTCGGCGCTGG
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]