GgaEX6015495 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8912399-8913020:-
Coord C1 exon
chr17:8912987-8913020
Coord A exon
chr17:8912831-8912914
Coord C2 exon
chr17:8912399-8912527
Length
84 bp
Sequences
Splice sites
3' ss Seq
CATTTCCTCCCCTCCTGCAGTCA
3' ss Score
8.86
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
CAGCATCAGCATGCTGGACACGCTGCTCTACCAG
Seq A exon
TCATTTGTGAAGGACTACATGATCACCATCACCCGGCTGCTGNTGGGCCTCGACACCACGCCGGGCTCTGGCTACCTCTGTGCG
Seq C2 exon
ATGAAGATCACGGAGGACGACCTGTGGATCCGGACCTACGGGCGCCTCTTCCAGAAGCTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATTTACCGGACGGAGTCGCACATGTTCGCCACCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCATGCTGGACACGC
R:
CTCGGAGGTGGCGAACATG
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]