DreEX6014304 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64890995-64896158:+
Coord C1 exon
chr5:64890995-64891096
Coord A exon
chr5:64893451-64893534
Coord C2 exon
chr5:64896030-64896158
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGTTTATATTGTGTTCTAGTCG
3' ss Score
9.07
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATAGAGCGAGATAAGGGATCGAATCTGGCGTTCATGTTCCGCCTGCCGTTCGCTGCAGGCAGAGTCTTCAGTATCAGCATGCTGGATACTCTGCTTTACCAG
Seq A exon
TCGTTTGTGAAGGACTATATGATTCTCATTGCGCGGCTCCTCCTGGGTTTAGACACCACCCCGGGCTCAGGATACCTCTGTGCT
Seq C2 exon
ATGAAGGTAACAGAAGAGGACTTATGGATTCGAACGTATGGGAGACTCTTCCAGAAGCTGTGTTCCTCCAGCGCAGAGATTCCCATCGGGATTTACCGCACCGAATCCCACATGTTCTCCTCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-'27-33,'27-32,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCGAATCTGGCGTTCAT
R:
GAATCTCTGCGCTGGAGGAAC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]