BtaEX6047086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103426210-103427065:+
Coord C1 exon
chr11:103426210-103426382
Coord A exon
chr11:103426753-103426824
Coord C2 exon
chr11:103426931-103427065
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGGCCCTGCTGTGCCCACAGGCC
3' ss Score
8.45
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCTGCAAGCACAACAGCTACGAAGATGCCAAGGCCTATGGCTTCAAGAACAAGCTGATCATCGTCTCAGCGGAGACGGCGGGCAACGGGCTGTACAACTTCATCGTGCCGCTGCGCGCCTACTACCGGCCTCGCCGGGAGCTCAACCCCATTGTGCTGCTGCTGGACAACAA
Seq A exon
GCCCGACCACCACTTCCTGGAGGCCATCTGCTGCTTTCCCATGGTCTACTACATGGAGGGCTCCGTGGACAA
Seq C2 exon
CCTGGACAGCCTGCTGCGGTGCGGTGTCATCTACGCGGACAATCTGGTGGTGGCAGACAAGGAGAGCACCATGAGCGCTGAGGAGGACTACATGGCCGACGCAAAGACCATCGTCAATGTGCAGACCATGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'32-28,'32-27,33-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGGGCTGTACAACTTCA
R:
GCTCATGGTGCTCTCCTTGTC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]