GgaEX6015492 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8914357-8915193:-
Coord C1 exon
chr17:8915021-8915193
Coord A exon
chr17:8914786-8914857
Coord C2 exon
chr17:8914357-8914491
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCGCTCTTCTTGCAGACC
3' ss Score
11.2
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGCTGCAAGCACAACAGCTTTGAAGATGCCAAAGCCTATGGCTTTAAGAACAAGTTGATCATCGTGTCGGCAGAGACTGCAGGCAATGGGCTGTATAACTTCATCGTCCCACTGCGTGCCTACTATCGGTCTCGCAAAGAGTTGAACCCAATTGTGTTGCTTCTGGACAACAA
Seq A exon
ACCAGAGCACCACTTTCTGGAAGCCATCTGTTGTTTCCCCATGGTTTACTACATGGAAGGCACCATTGACAA
Seq C2 exon
CCTGGACAGCCTGCTGCAGTGCGGCATCATCTACGCCGACAACCTGGTGGTCGTGGACAAGGAGAGCACCATGAGTGCTGAGGAGGACTACATGGCGGATGCAAAGACGATTGTCAACGTCCAGACCATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'23-26,'23-23,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTACTATCGGTCTCGCAA
R:
AATCGTCTTTGCATCCGCCAT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]