RnoEX0046233 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3353965-3355110:+
Coord C1 exon
chr3:3353965-3354137
Coord A exon
chr3:3354779-3354850
Coord C2 exon
chr3:3354976-3355110
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGGCCCTGCTGTCCTCACAGGCC
3' ss Score
8.16
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GGCTGCAAACACAACAGCTATGAGGATGCCAAGGCCTACGGGTTCAAGAACAAGTTGATCATCGTCTCTGCTGAGACGGCAGGCAACGGGCTCTACAACTTCATCGTGCCTCTGCGTGCCTACTACCGGTCCCGCCGGGAGCTCAACCCCATTGTGCTGCTGCTTGACAACAA
Seq A exon
GCCTGACCACCACTTCCTGGAGGCCATCTGCTGCTTCCCCATGGTCTACTACATGGAGGGATCCGTGGACAA
Seq C2 exon
CCTGGACAGCTTGCTGCAGTGTGGCATCATCTATGCTGACAATCTGGTGGTGGTGGACAAGGAGAGTACCATGAGCGCTGAAGAGGACTACATGGCAGATGCCAAGACCATTGTCAACGTGCAGACCATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGGGCTCTACAACTTCA
R:
AGCGCTCATGGTACTCTCCTT
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]