BtaEX6047102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103474157-103489544:-
Coord C1 exon
chr11:103489385-103489544
Coord A exon
chr11:103475066-103475328
Coord C2 exon
chr11:103474157-103474318
Length
263 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTCCTGTCGCTGCAGATG
3' ss Score
8.14
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGGTGGACGCGGGCGGCTGCCCGGCCGGGGAGGGCTGGAGGAGGATGGAGGCCGCGCCCGACGGCGCCGTGGACATCGTGCCGCTGGACCGCTACGACCCGGCGCGGGCCAAGATCGCCGCCAACCTGCAGTGGATCTGCGCCAAGGCCTACGGCCGAG
Seq A exon
ATGACATCCCCGAGGACCTCAGGGACCCCTTCTACATCGACCAGTACGAGCAGGAGCACATCAAGCCTCCGGTCATCAAGCTCCTGCTGTCCAGCGAGCTGTACTGCCGCGTGTGCAGCCTCATCCTCAAAGGGGACCAGGTGGCCTCCCTGCAGGGACACCAGTCTGTCATCCAGGCCCTGTCCCGGAAAGGGATTTACGTGATGGAGAGCGACGACACCCCTGTGACGGAGCCCGACCTCAGCCACGCGCCCATCAAGATG
Seq C2 exon
AGCGCCCACATGGCGATGGTGGACGCCCTCATGATGGCCTACACCGTGGAGATGATCAGCATCGAGAAGGTGGTGGCCAGCGTCAAGCGCTTCTCCACCTTCAGCGCCTCCAAAGAGCTCCCATATGACCTTGAGGATGCCATGGTCTTCTGGGTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008-'1-1,'1-0,11-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(6.2=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCTGGAGGAGGATG
R:
TTGTTGACCCAGAAGACCATGG
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]